Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015794999.1_cds_XP_016441917.1_3636
CDS Infomation

[gene=LOC107767418] [db_xref=GeneID:107767418] [protein=probable carotenoid cleavage dioxygenase 4, chloroplastic] [protein_id=XP_016441917.1] [location=join(218414..219855,220994..221354)] [gbkey=CDS]
Sequence

ATGGATGCCTTCTCTTCCACTTTCCTTTCTACATTATCACAACACCCTAAATCTCTTCTT
TCTCCTAATTATTCTCCCAACACATCATCTTCTCCTTCTCTTAAAGTCTCCTCCGTTAGA
ATTGAAGAAAGGCCACAAACCACTACTAGAACAAAACCACAAGAAAAGCCAACCCCATCA
CCCTATACTGCTCCAAAAGACACTCCCAAAAGACAATTACCTACAAAATCAATAACCCCC
CAAAAAACAGTAGAGCCACCATTTCCATCGGTTATCTTCAATGCATTTGACGATTTCGTG
AACACTTTCATTGATCCTCCTTTGAAACCTTCTGTCGATCCAAAGTATATTCTTTCTAAC
AACTTCGCTCCGGTGGAGGAGCTTCCTCCTACTGAATGCGAGGTAGTGGTAGGCTCCCTT
CCGCCTTGCCTTGACGGTGCGTACATCCGAAATGGCCCCAATCCTCAGTATCTTCCACGT
GGACCTTACCATCTTTTTGATGGAGATGGAATGCTTCATTCCATTAAAATTTCTCAAGGC
AAAGCTACACTCTGCAGCCGATACGTCAAAACTTACAAATACACAATTGAACGTGAAGCT
GGTTCTCCGGTTTTGCCAAATGTATTCTCCGGTTTCAACGGTCTCACTGCCTCGGCGGCG
CGTGGTGCTATCACCGCGGCTCGAGCGATTGCAGGACAGTTCAATCCCACTAACGGCATA
GGCCTAGCAAACACAAGCTTGGCTTTATTCGGAGGCAAACTTTTCGCTCTTGGTGAATCT
GATTTACCGTATGCAGTAAAATTAGCCCCAGATGGTGATATTATTACCCTCGGCCGTTAC
GATTTCGACGGAAAACTTTTCATGAGCATGACGGCACATCCCAAAATTGACCCAGATACT
AACGAGGCTTTTGCTTTCCGTTACGGTCCAATGCCTCCGTTTTTAACTTACTTTAGAATC
GAACCAAGTGGTACAAAAACCCCAGACGTGCCAATATTTTCTATGACACGTCCGTCATTT
CTGCATGACTTTGCAATTACAAAGAAATATGCGATATTCTCGGATATACAAATAGGAATG
AACCCACTTGAGTTCATCGCCGGTGGTTCACCGGTGAGTTCCGACTCAGGGAAAATTCCC
CGTCTTGGCGTGATTCCACGTTACGCCAAGGACGAGTCAGAAATGAAGTGGTTCGATGTG
CCCGGGTTTAATATCGTACATGCAATTAATGCGTGGGATGAAGATGACGGGGATACTATA
GTGATGGTGGCGCCGAATATATTGTCGGTGGAGCATACGCTGGAGAGAATGGATATGATA
CATGCGTCTGTTGAGAAAGTGAAGATAGATTTGAAGAGTGGGATGGTGAGCAGACATCCA
GTTTCGACAAGGAATCTTGATTTTGGAGTCATCAATCCTGCTTATGTTGGGAAGAAGAAC
AAGTATGTATATGCAGCGATTGGAGACCCAATGCCAAAGATAGCAGGCATAGCAAAATTG
GACGTATCAGTAGCAGAAGCTGACCGGCGCGATTGCATAGTGGGGTGCCGATTATTTGGC
GAAGGCTGCTTTGGCGGCGAGCCATATTTTGTGGCAAAGAATCCTAACAACTCGGTAGCG
GATGAGGACGATGGCTACGTTGTGTCGTATGTGCACAATGAGAAGACAGGAGAGTCAAGG
TTCTTGGTCATGGATGCAAAGTCCCCTAATCTTGACATTGTGGCTGCTGTCAAATTGCCT
CGTCGAGTGCCTTACGGTTTCCACGGGCTTTTCGTCAGGGAAATTGATCTTAGCAAACTG
TAG

Peptide Sequence

PEP ID

XP_016441917.1
PEP Infomation

PREDICTED: probable carotenoid cleavage dioxygenase 4, chloroplastic [Nicotiana tabacum]
Sequence

MDAFSSTFLSTLSQHPKSLLSPNYSPNTSSSPSLKVSSVRIEERPQTTTRTKPQEKPTPS
PYTAPKDTPKRQLPTKSITPQKTVEPPFPSVIFNAFDDFVNTFIDPPLKPSVDPKYILSN
NFAPVEELPPTECEVVVGSLPPCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISQG
KATLCSRYVKTYKYTIEREAGSPVLPNVFSGFNGLTASAARGAITAARAIAGQFNPTNGI
GLANTSLALFGGKLFALGESDLPYAVKLAPDGDIITLGRYDFDGKLFMSMTAHPKIDPDT
NEAFAFRYGPMPPFLTYFRIEPSGTKTPDVPIFSMTRPSFLHDFAITKKYAIFSDIQIGM
NPLEFIAGGSPVSSDSGKIPRLGVIPRYAKDESEMKWFDVPGFNIVHAINAWDEDDGDTI
VMVAPNILSVEHTLERMDMIHASVEKVKIDLKSGMVSRHPVSTRNLDFGVINPAYVGKKN
KYVYAAIGDPMPKIAGIAKLDVSVAEADRRDCIVGCRLFGEGCFGGEPYFVAKNPNNSVA
DEDDGYVVSYVHNEKTGESRFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVREIDLSKL

Transcript Sequence

Gene sequence data has not been registered.